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Publications

Nonlinear rheology of entangled polymer solutions in narrow gaps probed by confocal microscopy

Cornell Affiliated Author(s)
Author
K.A. Hayes
M.R. Buckley
Itai Cohen
L.A. Archer
Abstract

Two likely causes of Type C Damping in highly entangled polymers are interfacial slip and shear banding. To isolate these mechanisms, we use confocal microscopy and particle image velocimetry to visualize flow in a planar-Couette shear. Polybutadiene (Mw=200K, 1.1 M) solutions with different entanglement densities (8≤Z≤56) are sheared in narrow gaps ∼35μm. Not only does the velocity at the boundaries violate the no-slip condition, but the velocity profiles are linear. This is inconsistent with shear banding. The measured shear rates and stresses are used to characterize interfacial slip.

Conference Name
Conference
Date Published

Cryocrystallography in capillaries: Critical glycerol concentrations and cooling rates

Cornell Affiliated Author(s)
Author
M. Warkentin
V. Stanislavskaia
K. Hammes
R.E. Thorne
Abstract

Capillary tubes have many advantages over multi-well plates for macromolecular crystal growth and handling, including the possibility of in situ structure determination. To obtain complete high-resolution X-ray data sets, cryopreservation protocols must be developed to prevent crystalline ice formation and preserve macromolecular crystal order. The minimum glycerol concentrations required to vitrify aqueous solutions during plunging into liquid nitrogen and liquid propane have been determined for capillary diameters from 3.3 mm to 150 μm.

Journal
Journal of Applied Crystallography
Date Published
Research Area
Group (Lab)
Robert Thorne Group

How Cooper pairs vanish approaching the Mott insulator in Bi 2Sr2CaCu2O8+δ

Cornell Affiliated Author(s)
Author
Y. Kohsaka
C. Taylor
P. Wahl
A. Schmidt
J. Lee
K. Fujita
J.W. Alldredge
K. McElroy
J. Lee
H. Eisaki
S. Uchida
D.-H. Lee
J.C. Davis
Abstract

The antiferromagnetic ground state of copper oxide Mott insulators is achieved by localizing an electron at each copper atom in real space (r-space). Removing a small fraction of these electrons (hole doping) transforms this system into a superconducting fluid of delocalized Cooper pairs in momentum space (k-space). During this transformation, two distinctive classes of electronic excitations appear.

Journal
Nature
Date Published
Group (Lab)
J.C. Seamus Davis Group

Mapping the depth dependence of shear properties in articular cartilage

Cornell Affiliated Author(s)
Author
M.R. Buckley
J.P. Gleghorn
L.J. Bonassar
Itai Cohen
Abstract

Determining the depth dependence of the shear properties of articular cartilage is essential for understanding the structure-function relation in this tissue. Here, we measured spatial variations in the shear modulus G of bovine articular cartilage using a novel technique that combines shear testing, confocal imaging and force measurement.

Journal
Journal of Biomechanics
Date Published
Funding Source
SEED DMR-0079992
R21AR054867
NNG-04GN57 H
Research Area
Group (Lab)
Itai Cohen Group

Restricted dislocation motion in crystals of colloidal dimer particles

Cornell Affiliated Author(s)
Author
S.J. Gerbode
S.H. Lee
C.M. Liddell
Itai Cohen
Abstract

At high area fractions, monolayers of colloidal dimer particles form a degenerate crystal (DC) structure in which the particle lobes occupy triangular lattice sites while the particles are oriented randomly along any of the three lattice directions. We report that dislocation glide in DCs is blocked by certain particle orientations. The mean number of lattice constants between such obstacles is Z̄exp=4.6±0.2 in experimentally observed DC grains and Z̄sim=6.18±0.01 in simulated monocrystalline DCs.

Journal
Physical Review Letters
Date Published
Group (Lab)
Itai Cohen Group

Sloppiness, robustness, and evolvability in systems biology

Cornell Affiliated Author(s)
Author
B.C. Daniels
Y.-J. Chen
J.P. Sethna
R.N. Gutenkunst
C.R. Myers
Abstract

The functioning of many biochemical networks is often robust - remarkably stable under changes in external conditions and internal reaction parameters. Much recent work on robustness and evolvability has focused on the structure of neutral spaces, in which system behavior remains invariant to mutations. Recently we have shown that the collective behavior of multiparameter models is most often sloppy: insensitive to changes except along a few 'stiff' combinations of parameters, with an enormous sloppy neutral subspace.

Journal
Current Opinion in Biotechnology
Date Published
Funding Source
DGE-0333366
DMR-0705167
0333366
Research Area
Group (Lab)
James Sethna Group

Positive feedback of G1 cyclins ensures coherent cell cycle entry

Cornell Affiliated Author(s)
Author
J.M. Skotheim
S. Di Talia
E.D. Siggia
F.R. Cross
Abstract

In budding yeast, Saccharomyces cerevisiae, the Start checkpoint integrates multiple internal and external signals into an all-or-none decision to enter the cell cycle. Here we show that Start behaves like a switch due to systems-level feedback in the regulatory network. In contrast to current models proposing a linear cascade of Start activation, transcriptional positive feedback of the G1 cyclins Cln1 and Cln2 induces the near-simultaneous expression of the ∼200-gene G1/S regulon. Nuclear Cln2 drives coherent regulon expression, whereas cytoplasmic Cln2 drives efficient budding.

Journal
Nature
Date Published
Funding Source
F32GM078769
Research Area

Size and frequency dependent gas damping of nanomechanical resonators

Cornell Affiliated Author(s)
Author
S.S. Verbridge
R. Ilic
H.G. Craighead
J.M. Parpia
Abstract

We examine size and frequency dependent gas damping of nanobeam resonators. We find an optimal beam width that maximizes the quality factor at atmospheric pressure, balancing the dissipation that scales with surface-to-volume ratio and dominates at small widths, against the interaction with the underlying substrate via the air that dominates the behavior of the wider devices. This latter interaction is found to affect the Knudsen number corresponding to a transition out of the molecular damping regime.

Journal
Applied Physics Letters
Date Published
Funding Source
HR0011-06-1-0042
Group (Lab)
Jeevak Parpia Group

Quantum Monte Carlo algorithms for electronic structure at the petascale; The Endstation project

Cornell Affiliated Author(s)
Author
K Esler
J Kim
D Ceperley
W Purwanto
E Walter
H Krakauer
S Zhang
P Kent
R Hennig
C Umrigar
M Bajdich
J KolorenÄ
L Mitas
A Srinivasan
Abstract

Over the past two decades, continuum quantum Monte Carlo (QMC) has proved to be an invaluable tool for predicting of the properties of matter from fundamental principles. By solving the Schrödinger equation through a stochastic projection, it achieves the greatest accuracy and reliability of methods available for physical systems containing more than a few quantum particles. QMC enjoys scaling favorable to quantum chemical methods, with a computational effort which grows with the second or third power of system size.

Conference Name
The Endstation project
Date Published
Group (Lab)
Cyrus Umrigar Group