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Publications

Synergistic action of RNA polymerases in overcoming the nucleosomal barrier

Cornell Affiliated Author(s)
Author
J. Jin
L. Bai
D.S. Johnson
R.M. Fulbright
M.L. Kireeva
M. Kashlev
M.D. Wang
Abstract

During gene expression, RNA polymerase (RNAP) encounters a major barrier at a nucleosome and yet must access the nucleosomal DNA. Previous in vivo evidence has suggested that multiple RNAPs might increase transcription efficiency through nucleosomes. Here we have quantitatively investigated this hypothesis using Escherichia coli RNAP as a model system by directly monitoring its location on the DNA via a single-molecule DNA-unzipping technique. When an RNAP encountered a nucleosome, it paused with a distinctive 10-base pair periodicity and backtracked by ∼10-15 base pairs.

Journal
Nature Structural and Molecular Biology
Date Published
Research Area
Group (Lab)
Michelle Wang Group

Fractional quantum Hall states in the vicinity of Mott plateaus

Cornell Affiliated Author(s)
Author
R.O. UmucalIlar
E.J. Mueller
Abstract

We perform variational Monte Carlo calculations to show that bosons in a rotating optical lattice will form analogs of fractional quantum Hall states when the tunneling is sufficiently weak compared to the interactions, and the deviation of density from an integer is commensurate with the effective magnetic field. We compare the energies of superfluid and correlated states to one another and to the energies found in full configuration-interaction calculations on small systems.

Journal
Physical Review A - Atomic, Molecular, and Optical Physics
Date Published
Funding Source
0758104

Spin waves in a spin-1 normal Bose gas

Cornell Affiliated Author(s)
Author
S.S. Natu
E.J. Mueller
Abstract

We present a theory of spin waves in a noncondensed gas of spin-1 bosons and provide both analytic calculations of the linear theory and full numerical simulations of the nonlinear response. We highlight the role of spin-dependent contact interactions in the dynamics of a thermal gas. Although these interactions are small compared to the thermal energy, they set the scale for low-energy, long-wavelength spin waves. In particular, we find that the polar state of Rb87 is unstable to collisional mixing of magnetic sublevels even in the normal state.

Journal
Physical Review A - Atomic, Molecular, and Optical Physics
Date Published

Constitutive curve and velocity profile in entangled polymers during start-up of steady shear flow

Cornell Affiliated Author(s)
Author
K.A. Hayes
M.R. Buckley
H. Qi
Itai Cohen
L.A. Archer
Abstract

Time-dependent shear stress versus shear rate, constitutive curve, and velocity profile measurements are reported in entangled polymer solutions during start-up of steady shear flow. By combining confocal microscopy and particle image velocimetry (PIV), we determine the time-dependent velocity profile in polybutadiene and polystyrene solutions seeded with fluorescent 150 nm silica and 7.5 μm melamine particles.

Journal
Macromolecules
Date Published
Group (Lab)
Itai Cohen Group

CMOS integrated radio frequency dome resonator

Cornell Affiliated Author(s)
Author
W. Zhou
J.D. Cross
M. Zalalutdinov
B. Ilic
J.W. Baldwin
B.H. Houston
H.G. Craighead
J.M. Parpia
Abstract

Resonant RF MEMS structures can offer excellent performance for integrated sensing and RF signal processing applications. MEMS devices offer small size and low power consumption and improved physical parameters such as FQ product; however, significant impediments to a large scale commercial adoption include: production cost, difficulty of implementation and signal transduction.

Journal
Microelectronic Engineering
Date Published
Group (Lab)
Jeevak Parpia Group

High current and high brightness electron sources

Cornell Affiliated Author(s)
Author
F. Loehl
I. Bazarov
S. Belomestnykh
M. Billing
E. Chojnacki
Z. Conway
J. Dobbins
B. Dunham
R. Ehrlich
M. Forster
Sol Gruner
C. Gulliford
G. Hoffstaetter
V. Kostroun
M. Liepe
Y. Li
X. Liu
H. Padamsee
D. Rice
V. Shemelin
E. Smith
K. Smolenski
M. Tigner
V. Veshcherevich
Z. Zhao
Abstract

The development of high current, high brightness electron guns is critically important for free-electron laser and energy recovery linear-accelerator light source facilities. In this paper, we will review the technical requirements of such projects and the status of on-going research throughout the community including results of emittance measurements and high current beam performance.

Conference Name
.
Date Published
Group (Lab)
Sol M. Gruner Group

Stress-based vapor sensing using resonant microbridges

Cornell Affiliated Author(s)
Author
D.R. Southworth
L.M. Bellan
Y. Linzon
H.G. Craighead
J.M. Parpia
Abstract

We demonstrate that silicon-polymer composite microbridges provide a robust means of water vapor detection at ambient pressure. Volumetric changes in the reactive polymer alter the tension in a doubly clamped structure leading to large and rapid changes in the resonance frequency. We demonstrate stress-based sensing of water vapor in ambient pressure nitrogen using doubly clamped buckled beams coated with a hygroscopic polymer. We show stress sensitivity of around 20 kPa (∼170 ppb of water vapor) and subsecond response time for coated microbridges.

Journal
Applied Physics Letters
Date Published
Funding Source
0908634
DMR-0908634
HR-00011-06-1-0042
Group (Lab)
Jeevak Parpia Group

Fruit flies modulate passive wing pitching to generate in-flight turns

Cornell Affiliated Author(s)
Author
A.J. Bergou
L. Ristroph
J. Guckenheimer
Itai Cohen
Z.J. Wang
Abstract

Flying insects execute aerial maneuvers through subtle manipulations of their wing motions. Here, we measure the free-flight kinematics of fruit flies and determine how they modulate their wing pitching to induce sharp turns. By analyzing the torques these insects exert to pitch their wings, we infer that the wing hinge acts as a torsional spring that passively resists the wing's tendency to flip in response to aerodynamic and inertial forces. To turn, the insects asymmetrically change the spring rest angles to generate asymmetric rowing motions of their wings.

Journal
Physical Review Letters
Date Published
Research Area
Group (Lab)
Itai Cohen Group
Z. Jane Wang Group

Interference of nematic quantum critical quasiparticles: A route to the octet model

Cornell Affiliated Author(s)
Author
Eun-Ah Kim
M.J. Lawler
Abstract

We study the effect of nematic quantum critical fluctuations on quasiparticle interference. We show that nematic quantum critical fluctuations, which cause back and forth slushing of the d -wave nodes along the underlying Fermi surface, provide a natural mechanism for the accumulation of coherence that has been present in QPI experiments. © 2010 The American Physical Society.

Journal
Physical Review B - Condensed Matter and Materials Physics
Date Published
Group (Lab)
Michael Lawler Group