Skip to main content

Publications

Polarity of the CRISPR roadblock to transcription

Cornell Affiliated Author(s)
Author
P.M. Hall
J.T. Inman
R.M. Fulbright
T.T. Le
J.J. Brewer
G. Lambert
S.A. Darst
M.D. Wang
Abstract

CRISPR (clustered regularly interspaced short palindromic repeats) utility relies on a stable Cas effector complex binding to its target site. However, a Cas complex bound to DNA may be removed by motor proteins carrying out host processes and the mechanism governing this removal remains unclear. Intriguingly, during CRISPR interference, RNA polymerase (RNAP) progression is only fully blocked by a bound endonuclease-deficient Cas (dCas) from the protospacer adjacent motif (PAM)-proximal side.

Journal
Nature Structural and Molecular Biology
Date Published
Research Area
Group (Lab)
Michelle Wang Group

STRAINS: A big data method for classifying cellular response to stimuli at the tissue scale

Author
J. Zheng
T.W. Jackson
L.A. Fortier
L.J. Bonassar
M.L. Delco
Itai Cohen
Abstract

Cellular response to stimulation governs tissue scale processes ranging from growth and development to maintaining tissue health and initiating disease. To determine how cells coordinate their response to such stimuli, it is necessary to simultaneously track and measure the spatiotemporal distribution of their behaviors throughout the tissue. Here, we report on a novel SpatioTemporal Response Analysis IN Situ (STRAINS) tool that uses fluorescent micrographs, cell tracking, and machine learning to measure such behavioral distributions.

Journal
PLoS ONE
Date Published
Funding Source
BMMB-1536463 IC
CMMI-1927197
DMR-1807602
K08AR068470
R01AR071394
R03AR075929
DMR-1719875
Group (Lab)
Itai Cohen Group

Reentrant rigidity percolation in structurally correlated filamentous networks

Cornell Affiliated Author(s)
Author
J. Michel
G. Von Kessel
T.W. Jackson
L.J. Bonassar
Itai Cohen
M. Das
Abstract

Many biological tissues feature a heterogeneous network of fibers whose tensile and bending rigidity contribute substantially to these tissues' elastic properties. Rigidity percolation has emerged as an important paradigm for relating these filamentous tissues' mechanics to the concentrations of their constituents. Past studies have generally considered tuning of networks by spatially homogeneous variation in concentration, while ignoring structural correlation.

Journal
Physical Review Research
Date Published
Funding Source
DMR-1807602
DMR-1808026
DMR-2118449
Research Area
Group (Lab)
Itai Cohen Group

Melting of generalized Wigner crystals in transition metal dichalcogenide heterobilayer Moiré systems

Cornell Affiliated Author(s)
Author
M. Matty
Eun-Ah Kim
Abstract

Moiré superlattice systems such as transition metal dichalcogenide heterobilayers have garnered significant recent interest due to their promising utility as tunable solid state simulators. Recent experiments on a WSe2/WS2 heterobilayer detected incompressible charge ordered states that one can view as generalized Wigner crystals. The tunability of the transition metal dichalcogenide heterobilayer Moiré system presents an opportunity to study the rich set of possible phases upon melting these charge-ordered states.

Journal
Nature Communications
Date Published
Group (Lab)

Strain-induced orbital-energy shift in antiferromagnetic RuO2 revealed by resonant elastic x-ray scattering

Cornell Affiliated Author(s)
Author
B.Z. Gregory
J. Strempfer
D. Weinstock
J.P. Ruf
Y. Sun
H. Nair
N.J. Schreiber
D.G. Schlom
K.M. Shen
A. Singer
Abstract

In its ground state, RuO2 was long thought to be an ordinary metallic paramagnet. Recent neutron and x-ray diffraction revealed that bulk RuO2 is an antiferromagnet with TN above 300 K. Furthermore, epitaxial strain induces superconductivity in thin films of RuO2 below 2 K. Here, we present a resonant elastic x-ray scattering study at the RuL2 edge of the strained RuO2 films exhibiting the strain-induced superconductivity. We observe an azimuthal modulation of the 100 Bragg peak consistent with bulk.

Journal
Physical Review B
Date Published
Funding Source
DMR-2104427
FA9550-21-1-0168
GBMF9073
DE-SC0019414
DE-AC02-06CH11357
Group (Lab)
Kyle Shen Group

Nanocalorimetry using microscopic optical wireless integrated circuits

Cornell Affiliated Author(s)
Author
Conrad Smart
Alejandro Cortese
B. Ramshaw
Paul McEuen
Abstract

We present in situ calorimetry, thermal conductivity, and thermal diffusivity measurements of materials using temperature-sensing optical wireless integrated circuits (OWiCs). These microscopic and untethered optical sensors eliminate input wires and reduce parasitic effects. Each OWiC has a mass of ∼100 ng, a 100-μm-scale footprint, and a thermal response time of microseconds. We demonstrate that they can measure the thermal properties of nearly any material, from aerogels to metals, on samples as small as 100 ng and over thermal diffusivities covering four orders of magnitude.

Journal
Proceedings of the National Academy of Sciences of the United States of America
Date Published
Group (Lab)
Brad Ramshaw Group
Paul McEuen Group

Universal scaling for disordered viscoelastic matter near the onset of rigidity

Author
Danilo Liarte
Stephen Thornton
Eric Schwen
Itai Cohen
Debanjan Chowdhury
James Sethna
Abstract

The onset of rigidity in interacting liquids, as they undergo a transition to a disordered solid, is associated with a rearrangement of the low-frequency vibrational spectrum. In this Letter, we derive scaling forms for the singular dynamical response of disordered viscoelastic networks near both jamming and rigidity percolation. Using effective-medium theory, we extract critical exponents, invariant scaling combinations, and analytical formulas for universal scaling functions near these transitions.

Journal
Physical Review E
Date Published
Funding Source
DMR-1719490
2010118
1509308
2016/01343-7
2021/14285-3
Group (Lab)
Debanjan Chowdhury Group
Itai Cohen Group
James Sethna Group

Lorentz electron ptychography for imaging magnetic textures beyond the diffraction limit

Cornell Affiliated Author(s)
Author
Zhen Chen
Emrah Turgut
Yi Jiang
Kayla Nguyen
Matthew Stolt
Song Jin
Daniel Ralph
Gregory Fuchs
David Muller
Abstract

Nanoscale spin textures, especially magnetic skyrmions, have attracted intense interest as candidate high-density and power-efficient information carriers for spintronic devices1,2. Facilitating a deeper understanding of sub-hundred-nanometre to atomic-scale spin textures requires more advanced magnetic imaging techniques3–5. Here we demonstrate a Lorentz electron ptychography method that can enable high-resolution, high-sensitivity magnetic field imaging for widely available electron microscopes.

Journal
Springer Science and Business Media LLC
Date Published
Funding Source
DMR-1719875
DMR-2039380
ECCS-1609585
TEE-D18AC00009

Theory of a continuous bandwidth-tuned Wigner-Mott transition

Cornell Affiliated Author(s)
Author
Seth Musser
T. Senthil
Debanjan Chowdhury
Abstract

We develop a theory for a continuous bandwidth-tuned transition at fixed fractional electron filling from a metal with a generic Fermi surface to a "Wigner-Mott"insulator that spontaneously breaks crystalline space-group symmetries. Across the quantum critical point, (i) the entire electronic Fermi surface disappears abruptly upon approaching from the metallic side, and (ii) the insulating charge gap and various order parameters associated with the spontaneously broken space-group symmetries vanish continuously upon approaching from the insulating side.

Journal
Physical Review B
Date Published
Funding Source
1745302
DE-SC0008739
2020213
651440
Group (Lab)
Debanjan Chowdhury Group

Criticality and entanglement in nonunitary quantum circuits and tensor networks of noninteracting fermions

Cornell Affiliated Author(s)
Author
C.-M. Jian
B. Bauer
A. Keselman
A.W.W. Ludwig
Abstract

Models for nonunitary quantum dynamics, such as quantum circuits that include projective measurements, have recently been shown to exhibit rich quantum critical behavior. There are many complementary perspectives on this behavior. For example, there is a known correspondence between d-dimensional local nonunitary quantum circuits and tensor networks on a [D=(d+1)]-dimensional lattice.

Journal
Physical Review B
Date Published
Funding Source
CNS1725797
DMR-1309667
DMR-1720256
GBMF8690
Group (Lab)
Chao-Ming Jian Group