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Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules

Cornell Affiliated Author(s)

Author

A. Shundrovsky
C.L. Smith
J.T. Lis
C.L. Peterson
M.D. Wang

Abstract

Chromatin-remodeling enzymes can overcome strong histone-DNA interactions within the nucleosome to regulate access of DNA-binding factors to the genetic code. By unzipping individual DNA duplexes, each containing a uniquely positioned nucleosome flanked by long segments of DNA, we directly probed histone-DNA interactions. The resulting disruption-force signatures were characteristic of the types and locations of interactions and allowed measurement of the positions of nucleosomes with 2.6-base-pair (bp) precision. Nucleosomes remodeled by yeast SWI/SNF were moved bidirectionally along the DNA, resulting in a continuous position distribution. The characteristic distance of motion was ∼28 bp per remodeling event, and each event occurred with a catalytic efficiency of 0.4 min-1 per nM SWI/SNF. Remodeled nucleosomes had essentially identical disruption signatures to those of unremodeled nucleosomes, indicating that their overall structure remained canonical. These results impose substantial constraints on the mechanism of SWI/SNF remodeling. © 2006 Nature Publishing Group.

Date Published

Journal

Nature Structural and Molecular Biology

Volume

13

Issue

6

Number of Pages

549-554,

URL

https://www.scopus.com/inward/record.uri?eid=2-s2.0-33744900357&doi=10.1038%2fnsmb1102&partnerID=40&md5=56d2d7fcd340d428d1e52afd5a0bddc4

DOI

10.1038/nsmb1102

Research Area

Group (Lab)

Michelle Wang Group

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