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High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

Cornell Affiliated Author(s)

Author

M.A. Hall
A. Shundrovsky
L. Bai
R.M. Fulbright
J.T. Lis
M.D. Wang

Abstract

The nature of the nucleosomal barrier that regulates access to the underlying DNA during many cellular processes is not fully understood. Here we present a detailed map of histone-DNA interactions along the DNA sequence to near base pair accuracy by mechanically unzipping single molecules of DNA, each containing a single nucleosome. This interaction map revealed a distinct ∼5-bp periodicity that was enveloped by three broad regions of strong interactions, with the strongest occurring at the dyad and the other two about ∼40-bp from the dyad. Unzipping up to the dyad allowed recovery of a canonical nucleosome upon relaxation of the DNA, but unzipping beyond the dyad resulted in removal of the histone octamer from its initial DNA sequence. These findings have important implications for how RNA polymerase and other DNA-based enzymes may gain access to DNA associated with a nucleosome. © 2009 Nature America, Inc. All rights reserved.

Date Published

Journal

Nature Structural and Molecular Biology

Volume

16

Issue

2

Number of Pages

124-129,

URL

https://www.scopus.com/inward/record.uri?eid=2-s2.0-59649112972&doi=10.1038%2fnsmb.1526&partnerID=40&md5=6ecf0f1728139c363b37effc0ba9b08b

DOI

10.1038/nsmb.1526

Research Area

Group (Lab)

Michelle Wang Group

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